Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs71902517 chr11:6939816 GAGA/G 5.55E-8 492 30.97 28.67 28.57 KM Plot
PRAD rs71912566 chr19:45460549 TTGAC/T 4.94E-5 484 30.57 30.85 45.2 KM Plot
PRAD rs71920000 chr11:24214341 TA/T 5.66E-9 493 30.8 37.47 22.92 KM Plot
PRAD rs7211063 chr17:58161499 C/T 1.77E-5 494 30.87 31 18.2 KM Plot
PRAD rs7214077 chr17:58174022 G/A 1.76E-5 494 30.8 31 26.93 KM Plot
PRAD rs7215412 chr17:58174853 G/A 1.76E-5 494 30.8 31 26.93 KM Plot
PRAD rs7215601 chr17:79637565 T/G 7.73E-5 492 28.63 32.7 28.57 KM Plot
PRAD rs7215860 chr17:58183556 A/G 1.76E-5 494 26.93 31 30.8 KM Plot
PRAD rs72256166 chr11:65225475 GT/G 5.24E-5 484 32.13 30.33 18.6 KM Plot
PRAD rs7227106 chr18:39467420 A/T 8.64E-7 490 29.17 38.58 21.9 KM Plot
PRAD rs72294580 chr10:99402154 CT/C 7.79E-6 481 31.2 29.15 24.67 KM Plot
PRAD rs7230378 chr18:39480385 A/G 0.000141 478 29.1 36.6 24.63 KM Plot
PRAD rs72458051 chr10:99402553 GCTTT/G 5.36E-6 492 31.27 29.13 24.67 KM Plot
PRAD rs72482244 chr12:52886424 C/T 0.000176 489 29.52 35.67 22.93 KM Plot
PRAD rs72489055 chr2:178804319 C/T 4.23E-5 493 30.78 31.93 20.48 KM Plot